IL_6YDP_022
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AAACU*ACUAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_022 not in the Motif Atlas
- Geometric match to IL_5J7L_037
- Geometric discrepancy: 0.1608
- The information below is about IL_5J7L_037
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
6YDP|1|AA|A|419
6YDP|1|AA|A|420
6YDP|1|AA|A|421
6YDP|1|AA|C|422
6YDP|1|AA|U|423
*
6YDP|1|AA|A|439
6YDP|1|AA|C|440
6YDP|1|AA|U|441
6YDP|1|AA|A|442
6YDP|1|AA|U|443
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AK
- uS11m
- Chain AU
- bS21m
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- uL2m
Coloring options: