IL_6YDP_025

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGU*AC

Length

5 nucleotides

Bulged bases

6YDP|1|AA|G|530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_025 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.2187

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6YDP|1|AA|G|529
6YDP|1|AA|G|530
6YDP|1|AA|U|531
*
6YDP|1|AA|A|834
6YDP|1|AA|C|835

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AX

mRNA

Chain Am

mS37