IL_6YDP_029

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAC*GUG

Length

8 nucleotides

Bulged bases

6YDP|1|AA|U|614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_029 not in the Motif Atlas

Geometric match to IL_4V88_450

Geometric discrepancy: 0.1965

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

6YDP|1|AA|U|612
6YDP|1|AA|A|613
6YDP|1|AA|U|614
6YDP|1|AA|A|615
6YDP|1|AA|C|616
*
6YDP|1|AA|G|689
6YDP|1|AA|U|690
6YDP|1|AA|G|691

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

mS33

Chain BC

Elongation factor G, mitochondrial