IL_6YDP_031

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

6YDP|1|AA|A|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_031 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.1631

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6YDP|1|AA|C|620
6YDP|1|AA|A|621
*
6YDP|1|AA|U|680
6YDP|1|AA|A|681
6YDP|1|AA|G|682

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AC

Mitochondrial ribosomal protein S24

Chain AE

Mitochondrial ribosomal protein S5

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14