IL_6YDP_039

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACCC*GACAAG

Length

11 nucleotides

Bulged bases

6YDP|1|AA|A|918, 6YDP|1|AA|A|919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|AA|C|851
6YDP|1|AA|A|852
6YDP|1|AA|C|853
6YDP|1|AA|C|854
6YDP|1|AA|C|855
*
6YDP|1|AA|G|915
6YDP|1|AA|A|916
6YDP|1|AA|C|917
6YDP|1|AA|A|918
6YDP|1|AA|A|919
6YDP|1|AA|G|920

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain An

Aurora kinase A interacting protein 1

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BC

Elongation factor G, mitochondrial