IL_6YDP_042

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAG*CACAACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|AA|G|867
6YDP|1|AA|U|868
6YDP|1|AA|A|869
6YDP|1|AA|G|870
*
6YDP|1|AA|C|897
6YDP|1|AA|A|898
6YDP|1|AA|C|899
6YDP|1|AA|A|900
6YDP|1|AA|A|901
6YDP|1|AA|C|902
6YDP|1|AA|C|903

Current chains

Chain AA

12S rRNA

Nearby chains

Chain Aj

mS34

Chain An

Aurora kinase A interacting protein 1

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain BO

uL14m

Chain BT

Mitochondrial ribosomal protein L19