IL_6YDP_051

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_051 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1238

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6YDP|1|BA|A|214
6YDP|1|BA|A|215
6YDP|1|BA|C|216
*
6YDP|1|BA|G|230
6YDP|1|BA|C|231
6YDP|1|BA|U|232

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B8

Mitochondrial ribosomal protein L35

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

uL15m

Chain Bb

Mitochondrial ribosomal protein L38

Chain Bl

Mrpl34

Chain Bt

Mitochondrial ribosomal protein L57