IL_6YDP_053

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_053 not in the Motif Atlas

Geometric match to IL_4WF9_020

Geometric discrepancy: 0.07

The information below is about IL_4WF9_020

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6YDP|1|BA|C|240
6YDP|1|BA|C|241
6YDP|1|BA|G|242
*
6YDP|1|BA|C|353
6YDP|1|BA|U|354
6YDP|1|BA|G|355

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

uL15m

Chain Bn

Mitochondrial ribosomal protein L51