IL_6YDP_056

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCA*UAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_056 not in the Motif Atlas

Geometric match to IL_1Z7F_002

Geometric discrepancy: 0.1072

The information below is about IL_1Z7F_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

6YDP|1|BA|C|259
6YDP|1|BA|C|260
6YDP|1|BA|A|261
*
6YDP|1|BA|U|316
6YDP|1|BA|A|317
6YDP|1|BA|G|318

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B7

Mitochondrial ribosomal protein L34

Chain BD

uL2m

Chain Be

Mitochondrial ribosomal protein L41