IL_6YDP_060
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCCCAAA*UCCAAUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_060 not in the Motif Atlas
- Geometric match to IL_5XWG_002
- Geometric discrepancy: 0.3847
- The information below is about IL_5XWG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74768.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6YDP|1|BA|C|394
6YDP|1|BA|C|395
6YDP|1|BA|C|396
6YDP|1|BA|C|397
6YDP|1|BA|A|398
6YDP|1|BA|A|399
6YDP|1|BA|A|400
*
6YDP|1|BA|U|411
6YDP|1|BA|C|412
6YDP|1|BA|C|413
6YDP|1|BA|A|414
6YDP|1|BA|A|415
6YDP|1|BA|U|416
6YDP|1|BA|G|417
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B3
- uL30m
- Chain Bb
- Mitochondrial ribosomal protein L38
- Chain Bk
- 39S ribosomal protein L48, mitochondrial
- Chain Bo
- mL52
- Chain Bt
- Mitochondrial ribosomal protein L57
Coloring options: