IL_6YDP_061

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

6YDP|1|BA|A|479

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_061 not in the Motif Atlas

Geometric match to IL_1NBS_005

Geometric discrepancy: 0.2803

The information below is about IL_1NBS_005

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6YDP|1|BA|G|478
6YDP|1|BA|A|479
6YDP|1|BA|G|480
*
6YDP|1|BA|C|588
6YDP|1|BA|C|589

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B3

uL30m

Chain BU

Mitochondrial ribosomal protein L20

Chain BV

Mitochondrial ribosomal protein L21

Chain BW

uL22m

Chain Bg

Mitochondrial ribosomal protein L43

Chain Bo

mL52