IL_6YDP_064

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

6YDP|1|BA|A|532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_064 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.1787

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

6YDP|1|BA|G|531
6YDP|1|BA|A|532
6YDP|1|BA|A|533
6YDP|1|BA|A|534
*
6YDP|1|BA|U|545
6YDP|1|BA|C|546

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B9

Ribosomal protein

Chain BK

Mitochondrial ribosomal protein L11

Chain Bp

mL53

Chain Bq

mL54