IL_6YDP_078

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

6YDP|1|BA|U|960, 6YDP|1|BA|A|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_078 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.1678

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6YDP|1|BA|G|928
6YDP|1|BA|C|929
*
6YDP|1|BA|G|959
6YDP|1|BA|U|960
6YDP|1|BA|A|961
6YDP|1|BA|U|962

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AV

fMet-tRNAMet (P site)

Chain An

Aurora kinase A interacting protein 1