IL_6YDP_079

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUAAUCACUUG*CUUG

Length

16 nucleotides

Bulged bases

6YDP|1|BA|A|933, 6YDP|1|BA|U|939, 6YDP|1|BA|U|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|BA|C|929
6YDP|1|BA|A|930
6YDP|1|BA|U|931
6YDP|1|BA|A|932
6YDP|1|BA|A|933
6YDP|1|BA|U|934
6YDP|1|BA|C|935
6YDP|1|BA|A|936
6YDP|1|BA|C|937
6YDP|1|BA|U|938
6YDP|1|BA|U|939
6YDP|1|BA|G|940
*
6YDP|1|BA|C|956
6YDP|1|BA|U|957
6YDP|1|BA|U|958
6YDP|1|BA|G|959

Current chains

Chain BA

12S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

fMet-tRNAMet (P site)

Chain An

Aurora kinase A interacting protein 1