IL_6YDP_081

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6YDP|1|BA|C|1050, 6YDP|1|BA|U|1436, 6YDP|1|BA|A|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_081 not in the Motif Atlas

Geometric match to IL_4WF9_079

Geometric discrepancy: 0.132

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

6YDP|1|BA|A|1049
6YDP|1|BA|C|1050
6YDP|1|BA|G|1051
*
6YDP|1|BA|C|1435
6YDP|1|BA|U|1436
6YDP|1|BA|A|1437
6YDP|1|BA|U|1438

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B5

bL32m

Chain BE

ICT1

Chain BW

uL22m