IL_6YDP_082

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUG*CU

Length

5 nucleotides

Bulged bases

6YDP|1|BA|U|1063

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_082 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.0921

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

6YDP|1|BA|A|1062
6YDP|1|BA|U|1063
6YDP|1|BA|G|1064
*
6YDP|1|BA|C|1265
6YDP|1|BA|U|1266

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

uL15m

Chain Bi

Mitochondrial ribosomal protein L45