IL_6YDP_093

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

6YDP|1|BA|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_093 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.2128

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

6YDP|1|BA|A|1282
6YDP|1|BA|U|1283
6YDP|1|BA|C|1284
*
6YDP|1|BA|G|1312
6YDP|1|BA|G|1313
6YDP|1|BA|U|1314
6YDP|1|BA|U|1315
6YDP|1|BA|U|1316

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L10

Chain BQ

uL16m

Chain Bt

Mitochondrial ribosomal protein L57