IL_6YDP_094

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_094 not in the Motif Atlas

Geometric match to IL_5J7L_338

Geometric discrepancy: 0.1708

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6YDP|1|BA|U|1289
6YDP|1|BA|C|1290
6YDP|1|BA|U|1291
6YDP|1|BA|A|1292
6YDP|1|BA|G|1293
*
6YDP|1|BA|C|1303
6YDP|1|BA|G|1304
6YDP|1|BA|A|1305
6YDP|1|BA|C|1306
6YDP|1|BA|A|1307

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B9

Ribosomal protein

Chain BQ

uL16m

Chain Bq

mL54