IL_6YDP_096

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

6YDP|1|BA|G|1399, 6YDP|1|BA|A|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_096 not in the Motif Atlas

Geometric match to IL_4WF9_095

Geometric discrepancy: 0.138

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6YDP|1|BA|A|1333
6YDP|1|BA|U|1334
6YDP|1|BA|C|1335
*
6YDP|1|BA|G|1397
6YDP|1|BA|U|1398
6YDP|1|BA|G|1399
6YDP|1|BA|A|1400
6YDP|1|BA|U|1401

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B5

bL32m

Chain BE

ICT1