IL_6YDP_104

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAA*UAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDP_104 not in the Motif Atlas

Homologous match to IL_5E81_374

Geometric discrepancy: 0.4123

The information below is about IL_5E81_374

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|BB|U|3
6YDP|1|BB|A|4
6YDP|1|BB|A|5
*
6YDP|1|BB|U|65
6YDP|1|BB|A|66
6YDP|1|BB|A|67

Current chains

Chain BB

CP tRNAPhe

Nearby chains

Chain Bd

Uncharacterized protein

Chain Bj

Mitochondrial ribosomal protein L46