IL_6YDP_106
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAAAAAAAUCACAAU*AAUAAUCC
- Length
- 24 nucleotides
- Bulged bases
- 6YDP|1|AA|A|309, 6YDP|1|AA|A|310, 6YDP|1|AA|A|311, 6YDP|1|AA|A|312, 6YDP|1|AA|A|313, 6YDP|1|AA|C|316, 6YDP|1|AA|A|319
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6YDP|1|AA|G|306
6YDP|1|AA|A|307
6YDP|1|AA|A|308
6YDP|1|AA|A|309
6YDP|1|AA|A|310
6YDP|1|AA|A|311
6YDP|1|AA|A|312
6YDP|1|AA|A|313
6YDP|1|AA|A|314
6YDP|1|AA|U|315
6YDP|1|AA|C|316
6YDP|1|AA|A|317
6YDP|1|AA|C|318
6YDP|1|AA|A|319
6YDP|1|AA|A|320
6YDP|1|AA|U|321
*
6YDP|1|AA|A|389
6YDP|1|AA|A|390
6YDP|1|AA|U|391
6YDP|1|AA|A|392
6YDP|1|AA|A|393
6YDP|1|AA|U|394
6YDP|1|AA|C|395
6YDP|1|AA|C|396
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AF
- bS6m
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain AO
- uS15m
- Chain AQ
- uS17m
- Chain AR
- Mitochondrial ribosomal protein S18C
- Chain Ac
- Mitochondrial ribosomal protein S25
- Chain Am
- mS37
Coloring options: