IL_6YDP_107

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGCCAAUUCAG*CUUAUG

Length

19 nucleotides

Bulged bases

6YDP|1|AA|C|599, 6YDP|1|AA|C|600, 6YDP|1|AA|U|604, 6YDP|1|AA|U|697, 6YDP|1|AA|U|699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|AA|C|595
6YDP|1|AA|U|596
6YDP|1|AA|U|597
6YDP|1|AA|G|598
6YDP|1|AA|C|599
6YDP|1|AA|C|600
6YDP|1|AA|A|601
6YDP|1|AA|A|602
6YDP|1|AA|U|603
6YDP|1|AA|U|604
6YDP|1|AA|C|605
6YDP|1|AA|A|606
6YDP|1|AA|G|607
*
6YDP|1|AA|C|695
6YDP|1|AA|U|696
6YDP|1|AA|U|697
6YDP|1|AA|A|698
6YDP|1|AA|U|699
6YDP|1|AA|G|700

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

mS33

Chain Ao

Pentatricopeptide repeat domain 3