IL_6YDP_108
3D structure
- PDB id
- 6YDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAACUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDP_108 not in the Motif Atlas
- Geometric match to IL_4WF9_117
- Geometric discrepancy: 0.1001
- The information below is about IL_4WF9_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
6YDP|1|BA|G|801
6YDP|1|BA|G|802
6YDP|1|BA|A|803
6YDP|1|BA|A|804
6YDP|1|BA|C|805
6YDP|1|BA|U|806
6YDP|1|BA|C|807
6YDP|1|BA|G|808
6YDP|1|BA|G|809
*
6YDP|1|BA|C|985
6YDP|1|BA|U|986
6YDP|1|BA|G|987
6YDP|1|BA|U|988
6YDP|1|BA|C|989
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain BE
- ICT1
- Chain BO
- uL14m
- Chain BT
- Mitochondrial ribosomal protein L19
Coloring options: