IL_6YDP_109

3D structure

PDB id

6YDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAAA*UUAACAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YDP|1|BA|A|1085
6YDP|1|BA|A|1086
6YDP|1|BA|A|1087
6YDP|1|BA|A|1088
*
6YDP|1|BA|U|1125
6YDP|1|BA|U|1126
6YDP|1|BA|A|1127
6YDP|1|BA|A|1128
6YDP|1|BA|C|1129
6YDP|1|BA|A|1130
6YDP|1|BA|U|1131

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B1

Mitochondrial ribosomal protein L28

Chain BI

Mitochondrial ribosomal protein L9