IL_6YDW_016
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YDW_016 not in the Motif Atlas
- Geometric match to IL_1R3E_002
- Geometric discrepancy: 0.2091
- The information below is about IL_1R3E_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_05670.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 9
Unit IDs
6YDW|1|AA|C|290
6YDW|1|AA|G|291
6YDW|1|AA|U|292
6YDW|1|AA|A|293
6YDW|1|AA|A|294
6YDW|1|AA|A|295
6YDW|1|AA|G|296
*
6YDW|1|AA|C|484
6YDW|1|AA|G|485
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain AQ
- uS17m
- Chain Am
- mS37
- Chain An
- Aurora kinase A interacting protein 1
Coloring options: