IL_6YDW_023

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUACUACUCG*CCUAAAAC

Length

18 nucleotides

Bulged bases

6YDW|1|AA|C|494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_023 not in the Motif Atlas

Geometric match to IL_6UFH_002

Geometric discrepancy: 0.3902

The information below is about IL_6UFH_002

Detailed Annotation

10x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_22278.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6YDW|1|AA|G|491
6YDW|1|AA|U|492
6YDW|1|AA|A|493
6YDW|1|AA|C|494
6YDW|1|AA|U|495
6YDW|1|AA|A|496
6YDW|1|AA|C|497
6YDW|1|AA|U|498
6YDW|1|AA|C|499
6YDW|1|AA|G|500
*
6YDW|1|AA|C|507
6YDW|1|AA|C|508
6YDW|1|AA|U|509
6YDW|1|AA|A|510
6YDW|1|AA|A|511
6YDW|1|AA|A|512
6YDW|1|AA|A|513
6YDW|1|AA|C|514

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

Mitochondrial ribosomal protein S12

Chain AO

uS15m

Chain An

Aurora kinase A interacting protein 1