IL_6YDW_034

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CC*GAACAAUAG

Length

11 nucleotides

Bulged bases

6YDW|1|AA|A|644, 6YDW|1|AA|A|647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_034 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.1743

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

6YDW|1|AA|C|633
6YDW|1|AA|C|634
*
6YDW|1|AA|G|643
6YDW|1|AA|A|644
6YDW|1|AA|A|645
6YDW|1|AA|C|646
6YDW|1|AA|A|647
6YDW|1|AA|A|648
6YDW|1|AA|U|649
6YDW|1|AA|A|650
6YDW|1|AA|G|651

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AB

Mitochondrial ribosomal protein S2

Chain AE

Mitochondrial ribosomal protein S5

Chain AI

Uncharacterized protein

Chain AU

bS21m

Chain Ab

mS23

Chain Am

mS37