IL_6YDW_036

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6YDW|1|AA|C|844, 6YDW|1|AA|A|929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_036 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1795

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6YDW|1|AA|C|843
6YDW|1|AA|C|844
6YDW|1|AA|G|845
*
6YDW|1|AA|C|927
6YDW|1|AA|A|928
6YDW|1|AA|A|929
6YDW|1|AA|G|930

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AV

tRNAMet

Chain AX

mRNA

Chain An

Aurora kinase A interacting protein 1

Chain BC

Elongation factor G, mitochondrial