IL_6YDW_055

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAAAC*GUGAUAGC

Length

13 nucleotides

Bulged bases

6YDW|1|BA|G|348, 6YDW|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_055 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1727

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6YDW|1|BA|G|242
6YDW|1|BA|A|243
6YDW|1|BA|A|244
6YDW|1|BA|A|245
6YDW|1|BA|C|246
*
6YDW|1|BA|G|346
6YDW|1|BA|U|347
6YDW|1|BA|G|348
6YDW|1|BA|A|349
6YDW|1|BA|U|350
6YDW|1|BA|A|351
6YDW|1|BA|G|352
6YDW|1|BA|C|353

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BF

Mitochondrial ribosomal protein L4

Chain BP

Uncharacterized protein

Chain Bn

Mitochondrial ribosomal protein L51