IL_6YDW_102

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCAAC*GCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YDW_102 not in the Motif Atlas

Geometric match to IL_4JRC_003

Geometric discrepancy: 0.201

The information below is about IL_4JRC_003

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

6YDW|1|BA|C|1483
6YDW|1|BA|C|1484
6YDW|1|BA|A|1485
6YDW|1|BA|A|1486
6YDW|1|BA|C|1487
*
6YDW|1|BA|G|1497
6YDW|1|BA|C|1498
6YDW|1|BA|G|1499

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BE

ICT1

Chain BO

Uncharacterized protein

Chain BT

Mitochondrial ribosomal protein L19