IL_6YEF_007
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAGAACUG*CUUAGUACC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YEF_007 not in the Motif Atlas
- Homologous match to IL_4WF9_008
- Geometric discrepancy: 0.0768
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6YEF|1|A|G|190
6YEF|1|A|A|191
6YEF|1|A|G|192
6YEF|1|A|A|193
6YEF|1|A|A|194
6YEF|1|A|C|195
6YEF|1|A|U|196
6YEF|1|A|G|197
*
6YEF|1|A|C|204
6YEF|1|A|U|205
6YEF|1|A|U|206
6YEF|1|A|A|207
6YEF|1|A|G|208
6YEF|1|A|U|209
6YEF|1|A|A|210
6YEF|1|A|C|211
6YEF|1|A|C|212
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain 6
- 50S ribosomal protein L34
- Chain 7
- 50S ribosomal protein L35
- Chain O
- 50S ribosomal protein L15
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