3D structure

PDB id
6YEF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAG*CGAAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6YEF_012 not in the Motif Atlas
Homologous match to IL_5J7L_254
Geometric discrepancy: 0.1336
The information below is about IL_5J7L_254
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69440.3
Basepair signature
cWW-L-R-cSH-cWW
Number of instances in this motif group
3

Unit IDs

6YEF|1|A|U|336
6YEF|1|A|A|337
6YEF|1|A|G|338
*
6YEF|1|A|C|386
6YEF|1|A|G|387
6YEF|1|A|A|388
6YEF|1|A|A|389
6YEF|1|A|A|390

Current chains

Chain A
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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