IL_6YEF_013

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAC*GAGUGAAAUAGAAC

Length

18 nucleotides

Bulged bases

6YEF|1|A|U|549, 6YEF|1|A|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_013 not in the Motif Atlas

Geometric match to IL_4WF9_015

Geometric discrepancy: 0.1079

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

6YEF|1|A|G|527
6YEF|1|A|C|528
6YEF|1|A|A|529
6YEF|1|A|C|530
*
6YEF|1|A|G|541
6YEF|1|A|A|542
6YEF|1|A|G|543
6YEF|1|A|U|544
6YEF|1|A|G|545
6YEF|1|A|A|546
6YEF|1|A|A|547
6YEF|1|A|A|548
6YEF|1|A|U|549
6YEF|1|A|A|550
6YEF|1|A|G|551
6YEF|1|A|A|552
6YEF|1|A|A|553
6YEF|1|A|C|554

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain X

50S ribosomal protein L24