IL_6YEF_017

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_017 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.0825

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6YEF|1|A|U|649
6YEF|1|A|U|650
6YEF|1|A|A|651
6YEF|1|A|A|652
6YEF|1|A|G|653
*
6YEF|1|A|U|663
6YEF|1|A|G|664
6YEF|1|A|G|665
6YEF|1|A|A|666
6YEF|1|A|G|667

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15