IL_6YEF_040

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCAGACAA*UCGAG

Length

14 nucleotides

Bulged bases

6YEF|1|A|A|1090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_040 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.2507

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6YEF|1|A|C|1087
6YEF|1|A|C|1088
6YEF|1|A|C|1089
6YEF|1|A|A|1090
6YEF|1|A|G|1091
6YEF|1|A|A|1092
6YEF|1|A|C|1093
6YEF|1|A|A|1094
6YEF|1|A|A|1095
*
6YEF|1|A|U|1152
6YEF|1|A|C|1153
6YEF|1|A|G|1154
6YEF|1|A|A|1155
6YEF|1|A|G|1156

Current chains

Chain A

23S rRNA

Nearby chains