IL_6YEF_043

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6YEF|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_043 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0932

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6YEF|1|A|C|1246
6YEF|1|A|G|1247
6YEF|1|A|U|1248
6YEF|1|A|U|1249
6YEF|1|A|G|1250
6YEF|1|A|A|1251
6YEF|1|A|A|1252
6YEF|1|A|G|1253
*
6YEF|1|A|U|1272
6YEF|1|A|G|1273
6YEF|1|A|G|1274
6YEF|1|A|A|1275
6YEF|1|A|G|1276

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L20