IL_6YEF_048

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_048 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0975

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6YEF|1|A|C|1388
6YEF|1|A|U|1389
6YEF|1|A|A|1390
6YEF|1|A|A|1391
6YEF|1|A|G|1392
*
6YEF|1|A|C|1413
6YEF|1|A|G|1414
6YEF|1|A|A|1415
6YEF|1|A|U|1416
6YEF|1|A|G|1417

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34

Chain D

50S ribosomal protein L2