IL_6YEF_053

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAG*UGAUUU

Length

11 nucleotides

Bulged bases

6YEF|1|A|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_053 not in the Motif Atlas

Geometric match to IL_2QWY_007

Geometric discrepancy: 0.326

The information below is about IL_2QWY_007

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.5

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6YEF|1|A|G|1480
6YEF|1|A|A|1481
6YEF|1|A|U|1482
6YEF|1|A|A|1483
6YEF|1|A|G|1484
*
6YEF|1|A|U|1598
6YEF|1|A|G|1599
6YEF|1|A|A|1600
6YEF|1|A|U|1601
6YEF|1|A|U|1602
6YEF|1|A|U|1603

Current chains

Chain A

23S rRNA

Nearby chains