IL_6YEF_059

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

6YEF|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_059 not in the Motif Atlas

Geometric match to IL_4WF9_065

Geometric discrepancy: 0.094

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6YEF|1|A|A|1713
6YEF|1|A|C|1714
6YEF|1|A|U|1715
6YEF|1|A|C|1716
6YEF|1|A|G|1717
6YEF|1|A|G|1718
*
6YEF|1|A|C|2017
6YEF|1|A|U|2018
6YEF|1|A|G|2019
6YEF|1|A|U|2020

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain N

50S ribosomal protein L14