IL_6YEF_067

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_067 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1355

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6YEF|1|A|U|1878
6YEF|1|A|U|1879
6YEF|1|A|A|1880
6YEF|1|A|A|1881
6YEF|1|A|G|1882
*
6YEF|1|A|C|1914
6YEF|1|A|G|1915
6YEF|1|A|A|1916
6YEF|1|A|A|1917
6YEF|1|A|G|1918

Current chains

Chain A

23S rRNA

Nearby chains