IL_6YEF_068

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_068 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1568

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6YEF|1|A|A|1883
6YEF|1|A|G|1884
6YEF|1|A|G|1885
6YEF|1|A|A|1886
6YEF|1|A|G|1887
*
6YEF|1|A|C|1909
6YEF|1|A|G|1910
6YEF|1|A|A|1911
6YEF|1|A|A|1912
6YEF|1|A|U|1913

Current chains

Chain A

23S rRNA

Nearby chains