IL_6YEF_081
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAG*CAUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YEF_081 not in the Motif Atlas
- Geometric match to IL_4V9F_080
- Geometric discrepancy: 0.1835
- The information below is about IL_4V9F_080
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_61476.2
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
6YEF|1|A|C|2324
6YEF|1|A|A|2325
6YEF|1|A|G|2326
*
6YEF|1|A|C|2344
6YEF|1|A|A|2345
6YEF|1|A|U|2346
6YEF|1|A|A|2347
6YEF|1|A|G|2348
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain G
- 50S ribosomal protein L5
- Chain R
- 50S ribosomal protein L18
Coloring options: