IL_6YEF_098

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

6YEF|1|A|A|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_098 not in the Motif Atlas

Homologous match to IL_4WF9_104

Geometric discrepancy: 0.0938

The information below is about IL_4WF9_104

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6YEF|1|A|G|2764
6YEF|1|A|A|2765
6YEF|1|A|U|2766
6YEF|1|A|A|2767
6YEF|1|A|A|2768
6YEF|1|A|G|2769
*
6YEF|1|A|U|2789
6YEF|1|A|G|2790
6YEF|1|A|A|2791
6YEF|1|A|A|2792
6YEF|1|A|G|2793
6YEF|1|A|C|2794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain H

50S ribosomal protein L6

Chain M

50S ribosomal protein L13