IL_6YEF_123

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_123 not in the Motif Atlas

Homologous match to IL_5J7L_018

Geometric discrepancy: 0.1

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6YEF|1|a|G|379
6YEF|1|a|C|380
6YEF|1|a|A|381
6YEF|1|a|A|382
6YEF|1|a|U|383
*
6YEF|1|a|A|397
6YEF|1|a|C|398

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16