IL_6YEF_128

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6YEF|1|a|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_128 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.1195

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.2

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

6

Unit IDs

6YEF|1|a|C|577
6YEF|1|a|G|578
6YEF|1|a|U|579
6YEF|1|a|A|580
6YEF|1|a|A|581
6YEF|1|a|A|582
6YEF|1|a|G|583
*
6YEF|1|a|C|889
6YEF|1|a|G|890

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17