IL_6YEF_152

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUG*CACUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_152 not in the Motif Atlas

Homologous match to IL_6CZR_158

Geometric discrepancy: 0.2305

The information below is about IL_6CZR_158

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_40144.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6YEF|1|a|G|1135
6YEF|1|a|U|1136
6YEF|1|a|U|1137
6YEF|1|a|G|1138
*
6YEF|1|a|C|1155
6YEF|1|a|A|1156
6YEF|1|a|C|1157
6YEF|1|a|U|1158
6YEF|1|a|C|1159

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S9

Chain j

ribosomal protein uS10