IL_6YEF_155
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6YEF|1|a|U|1296
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6YEF_155 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.1483
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6YEF|1|a|U|1257
6YEF|1|a|A|1258
6YEF|1|a|C|1259
6YEF|1|a|A|1260
6YEF|1|a|A|1261
6YEF|1|a|A|1262
6YEF|1|a|G|1263
*
6YEF|1|a|C|1294
6YEF|1|a|A|1295
6YEF|1|a|U|1296
6YEF|1|a|A|1297
6YEF|1|a|A|1298
6YEF|1|a|A|1299
6YEF|1|a|G|1300
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- ribosomal protein uS10
- Chain n
- 30S ribosomal protein S14
Coloring options: