IL_6YEF_158

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_158 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1131

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6YEF|1|a|C|1313
6YEF|1|a|G|1314
6YEF|1|a|G|1315
6YEF|1|a|A|1316
6YEF|1|a|U|1317
6YEF|1|a|U|1318
*
6YEF|1|a|A|1339
6YEF|1|a|U|1340
6YEF|1|a|G|1341
6YEF|1|a|A|1342
6YEF|1|a|A|1343
6YEF|1|a|G|1344

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S13