IL_6YEF_168

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGA*UAG

Length

7 nucleotides

Bulged bases

6YEF|1|a|G|1452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_168 not in the Motif Atlas

Geometric match to IL_7RQB_082

Geometric discrepancy: 0.1432

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6YEF|1|a|U|1450
6YEF|1|a|G|1451
6YEF|1|a|G|1452
6YEF|1|a|A|1453
*
6YEF|1|a|U|1470
6YEF|1|a|A|1471
6YEF|1|a|G|1472

Current chains

Chain a

16S rRNA

Nearby chains

Chain S

50S ribosomal protein L19

Chain t

30S ribosomal protein S20