IL_6YEF_180

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCGAG*CGG

Length

8 nucleotides

Bulged bases

6YEF|1|a|G|65, 6YEF|1|a|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6YEF_180 not in the Motif Atlas

Geometric match to IL_7DLZ_003

Geometric discrepancy: 0.2896

The information below is about IL_7DLZ_003

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6YEF|1|a|U|63
6YEF|1|a|C|64
6YEF|1|a|G|65
6YEF|1|a|A|66
6YEF|1|a|G|67
*
6YEF|1|a|C|102
6YEF|1|a|G|103
6YEF|1|a|G|104

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20